From e0c9cad16f6f1ab8d4532674c621a36fd0057004 Mon Sep 17 00:00:00 2001
From: dre0059 <eliska.dreveniakova@vsb.cz>
Date: Tue, 29 Apr 2025 12:09:49 +0200
Subject: [PATCH] Sofisticated graph of references
---
data/demo.mv.db | Bin 21037056 -> 21037056 bytes
data/demo.trace.db | 267 ++++++++++++++++++
.../controller/DocumentController.java | 51 +++-
.../controller/StatisticsController.java | 44 +++
.../repository/CategoryRepository.java | 2 +-
.../service/HeaderService.java | 10 -
.../resources/static/assets/logo_FEI_en.png | Bin 0 -> 27668 bytes
.../resources/templates/about-project.html | 123 ++++++++
.../templates/citation-timeline.html | 238 ++++++++++++++++
src/main/resources/templates/view-all.html | 2 +-
src/main/resources/templates/view-pdf.html | 77 ++++-
11 files changed, 795 insertions(+), 19 deletions(-)
create mode 100644 src/main/resources/static/assets/logo_FEI_en.png
create mode 100644 src/main/resources/templates/about-project.html
create mode 100644 src/main/resources/templates/citation-timeline.html
diff --git a/data/demo.mv.db b/data/demo.mv.db
index c687424bbc764ff63cdef9e93a82885258976e41..7ce692294bc8c4f8f1c7c478ed4243370dcb0e91 100644
GIT binary patch
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diff --git a/data/demo.trace.db b/data/demo.trace.db
index 3cde3d5..761ae41 100644
--- a/data/demo.trace.db
+++ b/data/demo.trace.db
@@ -3366,3 +3366,270 @@ insert into documents (abstract_text,category_id,content,doi,notes,publication_y
org.h2.jdbc.JdbcSQLDataException: Hodnota je prÃliÅ¡ dlhá pre stĺpec "TITLE CHARACTER VARYING(255)": "'The in vitro induction of human immunodeficiency virus (HIV) replication in pur... (311)"
Value too long for column "TITLE CHARACTER VARYING(255)": "'The in vitro induction of human immunodeficiency virus (HIV) replication in pur... (311)"; SQL statement:
insert into documents (abstract_text,category_id,content,doi,notes,publication_year,publisher,status,target,title,id) values (?,?,?,?,?,?,?,?,?,?,default) [22001-232]
+2025-04-29 11:42:42.721697+02:00 database: flush
+org.h2.message.DbException: Všeobecná chyba: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]"
+General error: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]" [50000-232]
+ at org.h2.message.DbException.get(DbException.java:212)
+ at org.h2.message.DbException.convert(DbException.java:407)
+ at org.h2.mvstore.db.Store.lambda$new$0(Store.java:122)
+ at org.h2.mvstore.MVStore.handleException(MVStore.java:1546)
+ at org.h2.mvstore.MVStore.panic(MVStore.java:371)
+ at org.h2.mvstore.MVStore.<init>(MVStore.java:291)
+ at org.h2.mvstore.MVStore$Builder.open(MVStore.java:2035)
+ at org.h2.mvstore.db.Store.<init>(Store.java:133)
+ at org.h2.engine.Database.<init>(Database.java:326)
+ at org.h2.engine.Engine.openSession(Engine.java:92)
+ at org.h2.engine.Engine.openSession(Engine.java:222)
+ at org.h2.engine.Engine.createSession(Engine.java:201)
+ at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:344)
+ at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:124)
+ at org.h2.Driver.connect(Driver.java:59)
+ at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:137)
+ at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:360)
+ at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:202)
+ at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:461)
+ at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:550)
+ at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:98)
+ at com.zaxxer.hikari.HikariDataSource.getConnection(HikariDataSource.java:111)
+ at org.springframework.boot.autoconfigure.h2.H2ConsoleAutoConfiguration.getConnectionUrl(H2ConsoleAutoConfiguration.java:94)
+ at java.base/java.util.stream.ReferencePipeline$3$1.accept(ReferencePipeline.java:215)
+ at java.base/java.util.ArrayList.forEach(ArrayList.java:1597)
+ at java.base/java.util.stream.SortedOps$RefSortingSink.end(SortedOps.java:395)
+ at java.base/java.util.stream.Sink$ChainedReference.end(Sink.java:261)
+ at java.base/java.util.stream.Sink$ChainedReference.end(Sink.java:261)
+ at java.base/java.util.stream.AbstractPipeline.copyInto(AbstractPipeline.java:571)
+ at java.base/java.util.stream.AbstractPipeline.wrapAndCopyInto(AbstractPipeline.java:560)
+ at java.base/java.util.stream.AbstractPipeline.evaluate(AbstractPipeline.java:636)
+ at java.base/java.util.stream.AbstractPipeline.evaluateToArrayNode(AbstractPipeline.java:291)
+ at java.base/java.util.stream.ReferencePipeline.toArray(ReferencePipeline.java:656)
+ at java.base/java.util.stream.ReferencePipeline.toArray(ReferencePipeline.java:662)
+ at java.base/java.util.stream.ReferencePipeline.toList(ReferencePipeline.java:667)
+ at org.springframework.boot.autoconfigure.h2.H2ConsoleAutoConfiguration.logDataSources(H2ConsoleAutoConfiguration.java:86)
+ at org.springframework.boot.autoconfigure.h2.H2ConsoleAutoConfiguration.lambda$h2Console$0(H2ConsoleAutoConfiguration.java:69)
+ at org.springframework.boot.autoconfigure.h2.H2ConsoleAutoConfiguration.withThreadContextClassLoader(H2ConsoleAutoConfiguration.java:78)
+ at org.springframework.boot.autoconfigure.h2.H2ConsoleAutoConfiguration.h2Console(H2ConsoleAutoConfiguration.java:69)
+ at java.base/jdk.internal.reflect.DirectMethodHandleAccessor.invoke(DirectMethodHandleAccessor.java:103)
+ at java.base/java.lang.reflect.Method.invoke(Method.java:580)
+ at org.springframework.beans.factory.support.SimpleInstantiationStrategy.lambda$instantiate$0(SimpleInstantiationStrategy.java:171)
+ at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiateWithFactoryMethod(SimpleInstantiationStrategy.java:88)
+ at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:168)
+ at org.springframework.beans.factory.support.ConstructorResolver.instantiate(ConstructorResolver.java:653)
+ at org.springframework.beans.factory.support.ConstructorResolver.instantiateUsingFactoryMethod(ConstructorResolver.java:645)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateUsingFactoryMethod(AbstractAutowireCapableBeanFactory.java:1351)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:1181)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:563)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:523)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:336)
+ at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:288)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:334)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:204)
+ at org.springframework.boot.web.servlet.ServletContextInitializerBeans.getOrderedBeansOfType(ServletContextInitializerBeans.java:211)
+ at org.springframework.boot.web.servlet.ServletContextInitializerBeans.getOrderedBeansOfType(ServletContextInitializerBeans.java:202)
+ at org.springframework.boot.web.servlet.ServletContextInitializerBeans.addServletContextInitializerBeans(ServletContextInitializerBeans.java:97)
+ at org.springframework.boot.web.servlet.ServletContextInitializerBeans.<init>(ServletContextInitializerBeans.java:86)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.getServletContextInitializerBeans(ServletWebServerApplicationContext.java:266)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.selfInitialize(ServletWebServerApplicationContext.java:240)
+ at org.springframework.boot.web.embedded.tomcat.TomcatStarter.onStartup(TomcatStarter.java:52)
+ at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4426)
+ at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164)
+ at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1203)
+ at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1193)
+ at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
+ at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
+ at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:148)
+ at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:749)
+ at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:772)
+ at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164)
+ at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1203)
+ at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1193)
+ at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:317)
+ at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75)
+ at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:148)
+ at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:749)
+ at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:203)
+ at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164)
+ at org.apache.catalina.core.StandardService.startInternal(StandardService.java:415)
+ at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164)
+ at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:870)
+ at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:164)
+ at org.apache.catalina.startup.Tomcat.start(Tomcat.java:437)
+ at org.springframework.boot.web.embedded.tomcat.TomcatWebServer.initialize(TomcatWebServer.java:128)
+ at org.springframework.boot.web.embedded.tomcat.TomcatWebServer.<init>(TomcatWebServer.java:107)
+ at org.springframework.boot.web.embedded.tomcat.TomcatServletWebServerFactory.getTomcatWebServer(TomcatServletWebServerFactory.java:516)
+ at org.springframework.boot.web.embedded.tomcat.TomcatServletWebServerFactory.getWebServer(TomcatServletWebServerFactory.java:222)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.createWebServer(ServletWebServerApplicationContext.java:188)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.onRefresh(ServletWebServerApplicationContext.java:162)
+ at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:621)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:146)
+ at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:752)
+ at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:439)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:318)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:1361)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:1350)
+ at com.dre0059.articleprocessor.ArticleProcessorApplication.main(ArticleProcessorApplication.java:10)
+Caused by: org.h2.jdbc.JdbcSQLNonTransientException: Všeobecná chyba: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]"
+General error: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]" [50000-232]
+ at org.h2.message.DbException.getJdbcSQLException(DbException.java:566)
+ at org.h2.message.DbException.getJdbcSQLException(DbException.java:489)
+ ... 98 more
+Caused by: org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]
+ at org.h2.mvstore.DataUtils.newMVStoreException(DataUtils.java:996)
+ at org.h2.mvstore.SingleFileStore.lockFileChannel(SingleFileStore.java:143)
+ at org.h2.mvstore.SingleFileStore.open(SingleFileStore.java:117)
+ at org.h2.mvstore.SingleFileStore.open(SingleFileStore.java:81)
+ at org.h2.mvstore.MVStore.<init>(MVStore.java:286)
+ ... 92 more
+2025-04-29 11:42:44.133669+02:00 database: flush
+org.h2.message.DbException: Všeobecná chyba: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]"
+General error: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]" [50000-232]
+ at org.h2.message.DbException.get(DbException.java:212)
+ at org.h2.message.DbException.convert(DbException.java:407)
+ at org.h2.mvstore.db.Store.lambda$new$0(Store.java:122)
+ at org.h2.mvstore.MVStore.handleException(MVStore.java:1546)
+ at org.h2.mvstore.MVStore.panic(MVStore.java:371)
+ at org.h2.mvstore.MVStore.<init>(MVStore.java:291)
+ at org.h2.mvstore.MVStore$Builder.open(MVStore.java:2035)
+ at org.h2.mvstore.db.Store.<init>(Store.java:133)
+ at org.h2.engine.Database.<init>(Database.java:326)
+ at org.h2.engine.Engine.openSession(Engine.java:92)
+ at org.h2.engine.Engine.openSession(Engine.java:222)
+ at org.h2.engine.Engine.createSession(Engine.java:201)
+ at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:344)
+ at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:124)
+ at org.h2.Driver.connect(Driver.java:59)
+ at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:137)
+ at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:360)
+ at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:202)
+ at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:461)
+ at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:550)
+ at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:98)
+ at com.zaxxer.hikari.HikariDataSource.getConnection(HikariDataSource.java:111)
+ at org.hibernate.engine.jdbc.connections.internal.DatasourceConnectionProviderImpl.getConnection(DatasourceConnectionProviderImpl.java:126)
+ at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator$ConnectionProviderJdbcConnectionAccess.obtainConnection(JdbcEnvironmentInitiator.java:467)
+ at org.hibernate.resource.transaction.backend.jdbc.internal.JdbcIsolationDelegate.delegateWork(JdbcIsolationDelegate.java:61)
+ at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.getJdbcEnvironmentUsingJdbcMetadata(JdbcEnvironmentInitiator.java:320)
+ at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:129)
+ at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator.initiateService(JdbcEnvironmentInitiator.java:81)
+ at org.hibernate.boot.registry.internal.StandardServiceRegistryImpl.initiateService(StandardServiceRegistryImpl.java:130)
+ at org.hibernate.service.internal.AbstractServiceRegistryImpl.createService(AbstractServiceRegistryImpl.java:263)
+ at org.hibernate.service.internal.AbstractServiceRegistryImpl.initializeService(AbstractServiceRegistryImpl.java:238)
+ at org.hibernate.service.internal.AbstractServiceRegistryImpl.getService(AbstractServiceRegistryImpl.java:215)
+ at org.hibernate.boot.model.relational.Database.<init>(Database.java:45)
+ at org.hibernate.boot.internal.InFlightMetadataCollectorImpl.getDatabase(InFlightMetadataCollectorImpl.java:226)
+ at org.hibernate.boot.internal.InFlightMetadataCollectorImpl.<init>(InFlightMetadataCollectorImpl.java:194)
+ at org.hibernate.boot.model.process.spi.MetadataBuildingProcess.complete(MetadataBuildingProcess.java:171)
+ at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.metadata(EntityManagerFactoryBuilderImpl.java:1431)
+ at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:1502)
+ at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:66)
+ at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:390)
+ at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:419)
+ at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:400)
+ at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:366)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1849)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1798)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:601)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:523)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:336)
+ at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:288)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:334)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:204)
+ at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:970)
+ at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:627)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:146)
+ at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:752)
+ at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:439)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:318)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:1361)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:1350)
+ at com.dre0059.articleprocessor.ArticleProcessorApplication.main(ArticleProcessorApplication.java:10)
+Caused by: org.h2.jdbc.JdbcSQLNonTransientException: Všeobecná chyba: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]"
+General error: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]" [50000-232]
+ at org.h2.message.DbException.getJdbcSQLException(DbException.java:566)
+ at org.h2.message.DbException.getJdbcSQLException(DbException.java:489)
+ ... 60 more
+Caused by: org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]
+ at org.h2.mvstore.DataUtils.newMVStoreException(DataUtils.java:996)
+ at org.h2.mvstore.SingleFileStore.lockFileChannel(SingleFileStore.java:143)
+ at org.h2.mvstore.SingleFileStore.open(SingleFileStore.java:117)
+ at org.h2.mvstore.SingleFileStore.open(SingleFileStore.java:81)
+ at org.h2.mvstore.MVStore.<init>(MVStore.java:286)
+ ... 54 more
+2025-04-29 11:42:45.852115+02:00 database: flush
+org.h2.message.DbException: Všeobecná chyba: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]"
+General error: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]" [50000-232]
+ at org.h2.message.DbException.get(DbException.java:212)
+ at org.h2.message.DbException.convert(DbException.java:407)
+ at org.h2.mvstore.db.Store.lambda$new$0(Store.java:122)
+ at org.h2.mvstore.MVStore.handleException(MVStore.java:1546)
+ at org.h2.mvstore.MVStore.panic(MVStore.java:371)
+ at org.h2.mvstore.MVStore.<init>(MVStore.java:291)
+ at org.h2.mvstore.MVStore$Builder.open(MVStore.java:2035)
+ at org.h2.mvstore.db.Store.<init>(Store.java:133)
+ at org.h2.engine.Database.<init>(Database.java:326)
+ at org.h2.engine.Engine.openSession(Engine.java:92)
+ at org.h2.engine.Engine.openSession(Engine.java:222)
+ at org.h2.engine.Engine.createSession(Engine.java:201)
+ at org.h2.engine.SessionRemote.connectEmbeddedOrServer(SessionRemote.java:344)
+ at org.h2.jdbc.JdbcConnection.<init>(JdbcConnection.java:124)
+ at org.h2.Driver.connect(Driver.java:59)
+ at com.zaxxer.hikari.util.DriverDataSource.getConnection(DriverDataSource.java:137)
+ at com.zaxxer.hikari.pool.PoolBase.newConnection(PoolBase.java:360)
+ at com.zaxxer.hikari.pool.PoolBase.newPoolEntry(PoolBase.java:202)
+ at com.zaxxer.hikari.pool.HikariPool.createPoolEntry(HikariPool.java:461)
+ at com.zaxxer.hikari.pool.HikariPool.checkFailFast(HikariPool.java:550)
+ at com.zaxxer.hikari.pool.HikariPool.<init>(HikariPool.java:98)
+ at com.zaxxer.hikari.HikariDataSource.getConnection(HikariDataSource.java:111)
+ at org.hibernate.engine.jdbc.connections.internal.DatasourceConnectionProviderImpl.getConnection(DatasourceConnectionProviderImpl.java:126)
+ at org.hibernate.engine.jdbc.env.internal.JdbcEnvironmentInitiator$ConnectionProviderJdbcConnectionAccess.obtainConnection(JdbcEnvironmentInitiator.java:467)
+ at org.hibernate.resource.transaction.backend.jdbc.internal.DdlTransactionIsolatorNonJtaImpl.getIsolatedConnection(DdlTransactionIsolatorNonJtaImpl.java:46)
+ at org.hibernate.resource.transaction.backend.jdbc.internal.DdlTransactionIsolatorNonJtaImpl.getIsolatedConnection(DdlTransactionIsolatorNonJtaImpl.java:39)
+ at org.hibernate.tool.schema.internal.exec.ImprovedExtractionContextImpl.getJdbcConnection(ImprovedExtractionContextImpl.java:63)
+ at org.hibernate.tool.schema.extract.spi.ExtractionContext.getQueryResults(ExtractionContext.java:43)
+ at org.hibernate.tool.schema.extract.internal.SequenceInformationExtractorLegacyImpl.extractMetadata(SequenceInformationExtractorLegacyImpl.java:39)
+ at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl.initializeSequences(DatabaseInformationImpl.java:66)
+ at org.hibernate.tool.schema.extract.internal.DatabaseInformationImpl.<init>(DatabaseInformationImpl.java:60)
+ at org.hibernate.tool.schema.internal.Helper.buildDatabaseInformation(Helper.java:185)
+ at org.hibernate.tool.schema.internal.AbstractSchemaMigrator.doMigration(AbstractSchemaMigrator.java:93)
+ at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.performDatabaseAction(SchemaManagementToolCoordinator.java:280)
+ at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.lambda$process$5(SchemaManagementToolCoordinator.java:144)
+ at java.base/java.util.HashMap.forEach(HashMap.java:1430)
+ at org.hibernate.tool.schema.spi.SchemaManagementToolCoordinator.process(SchemaManagementToolCoordinator.java:141)
+ at org.hibernate.boot.internal.SessionFactoryObserverForSchemaExport.sessionFactoryCreated(SessionFactoryObserverForSchemaExport.java:37)
+ at org.hibernate.internal.SessionFactoryObserverChain.sessionFactoryCreated(SessionFactoryObserverChain.java:35)
+ at org.hibernate.internal.SessionFactoryImpl.<init>(SessionFactoryImpl.java:324)
+ at org.hibernate.boot.internal.SessionFactoryBuilderImpl.build(SessionFactoryBuilderImpl.java:463)
+ at org.hibernate.jpa.boot.internal.EntityManagerFactoryBuilderImpl.build(EntityManagerFactoryBuilderImpl.java:1506)
+ at org.springframework.orm.jpa.vendor.SpringHibernateJpaPersistenceProvider.createContainerEntityManagerFactory(SpringHibernateJpaPersistenceProvider.java:66)
+ at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.createNativeEntityManagerFactory(LocalContainerEntityManagerFactoryBean.java:390)
+ at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.buildNativeEntityManagerFactory(AbstractEntityManagerFactoryBean.java:419)
+ at org.springframework.orm.jpa.AbstractEntityManagerFactoryBean.afterPropertiesSet(AbstractEntityManagerFactoryBean.java:400)
+ at org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean.afterPropertiesSet(LocalContainerEntityManagerFactoryBean.java:366)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1849)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1798)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:601)
+ at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:523)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.lambda$doGetBean$0(AbstractBeanFactory.java:336)
+ at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:288)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:334)
+ at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:204)
+ at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:970)
+ at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:627)
+ at org.springframework.boot.web.servlet.context.ServletWebServerApplicationContext.refresh(ServletWebServerApplicationContext.java:146)
+ at org.springframework.boot.SpringApplication.refresh(SpringApplication.java:752)
+ at org.springframework.boot.SpringApplication.refreshContext(SpringApplication.java:439)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:318)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:1361)
+ at org.springframework.boot.SpringApplication.run(SpringApplication.java:1350)
+ at com.dre0059.articleprocessor.ArticleProcessorApplication.main(ArticleProcessorApplication.java:10)
+Caused by: org.h2.jdbc.JdbcSQLNonTransientException: Všeobecná chyba: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]"
+General error: "org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]" [50000-232]
+ at org.h2.message.DbException.getJdbcSQLException(DbException.java:566)
+ at org.h2.message.DbException.getJdbcSQLException(DbException.java:489)
+ ... 64 more
+Caused by: org.h2.mvstore.MVStoreException: The file is locked: C:/Users/elidr/pdf-processor/data/demo.mv.db [2.3.232/7]
+ at org.h2.mvstore.DataUtils.newMVStoreException(DataUtils.java:996)
+ at org.h2.mvstore.SingleFileStore.lockFileChannel(SingleFileStore.java:143)
+ at org.h2.mvstore.SingleFileStore.open(SingleFileStore.java:117)
+ at org.h2.mvstore.SingleFileStore.open(SingleFileStore.java:81)
+ at org.h2.mvstore.MVStore.<init>(MVStore.java:286)
+ ... 58 more
diff --git a/src/main/java/com/dre0059/articleprocessor/controller/DocumentController.java b/src/main/java/com/dre0059/articleprocessor/controller/DocumentController.java
index 4fef59b..379bc5b 100644
--- a/src/main/java/com/dre0059/articleprocessor/controller/DocumentController.java
+++ b/src/main/java/com/dre0059/articleprocessor/controller/DocumentController.java
@@ -2,7 +2,9 @@ package com.dre0059.articleprocessor.controller;
import com.dre0059.articleprocessor.dto.DocumentDto;
import com.dre0059.articleprocessor.dto.SimpleDocumentDto;
+import com.dre0059.articleprocessor.model.Category;
import com.dre0059.articleprocessor.model.Dokument;
+import com.dre0059.articleprocessor.repository.CategoryRepository;
import com.dre0059.articleprocessor.repository.DocumentRepository;
import com.dre0059.articleprocessor.service.DocumentService;
@@ -23,6 +25,9 @@ public class DocumentController {
private final DocumentService documentService;
+ @Autowired
+ private CategoryRepository categoryRepository;
+
@Autowired
private DocumentRepository dokumentRepository;
@@ -53,23 +58,36 @@ public class DocumentController {
var references = documentService.getReferencedDocumentsById(id);
Dokument document = dokumentRepository.findById(id).get();
+
if (documentService.getDocumentById(id) == null) {
throw new IllegalArgumentException("Document with ID " + id + " not found.");
}
if(!document.getStatus().equals("Referenced"))
- model.addAttribute("category", document.getCategory().getName());
+ model.addAttribute("category", document.getCategory().getName());
model.addAttribute("author", document.authorsToString());
model.addAttribute("year", document.getYear());
model.addAttribute("doi", document.getDoi());
model.addAttribute("link", document.getTarget());
model.addAttribute("tags", document.tagsToString());
model.addAttribute("notes", document.getNotes());
+ model.addAttribute("status", document.getStatus());
model.addAttribute("documentId", id);
model.addAttribute("references", references);
model.addAttribute("docTitle", documentService.getDocumentById(id).getTitle());
+ // add category
+ if (document.getCategory() != null) {
+ model.addAttribute("category", document.getCategory().getName());
+ model.addAttribute("currentCategoryId", document.getCategory().getId());
+ } else {
+ model.addAttribute("category", "No category assigned");
+ model.addAttribute("currentCategoryId", null); // Ak nie je kategória, nastavÃme na null
+ }
+
+ model.addAttribute("categories", categoryRepository.findAll());
+
return "view-pdf";
}
@@ -104,4 +122,35 @@ public class DocumentController {
return ResponseEntity.ok(response);
}
+
+ @PostMapping("/api/documents/{documentId}/setCategory")
+ @ResponseBody
+ public ResponseEntity<Map<String, Object>> setCategory(@PathVariable Long documentId, @RequestBody Map<String, String> payload) {
+ Dokument document = dokumentRepository.findById(documentId)
+ .orElseThrow(() -> new IllegalArgumentException("Document not found"));
+
+ String categoryName = payload.get("categoryName");
+
+ // Skontrolujeme, Äi kategória existuje
+ Category category = categoryRepository.findByName(categoryName);
+ if (category == null) {
+ // Ak kategória neexistuje, môžeme buÄ priradiÅ¥ default hodnotu, alebo poslaÅ¥ error
+ return ResponseEntity.badRequest().body(Map.of("error", "Category with name '" + categoryName + "' not found"));
+ }
+
+ document.setCategory(category);
+ dokumentRepository.save(document);
+
+ Map<String, Object> response = new HashMap<>();
+ response.put("success", true);
+
+ return ResponseEntity.ok(response);
+ }
+ @GetMapping("/about")
+ public String aboutProject() {
+ return "about-project"; // názov HTML súboru bez prÃpony
+ }
+
+
+
}
diff --git a/src/main/java/com/dre0059/articleprocessor/controller/StatisticsController.java b/src/main/java/com/dre0059/articleprocessor/controller/StatisticsController.java
index 8a8348b..380f0c4 100644
--- a/src/main/java/com/dre0059/articleprocessor/controller/StatisticsController.java
+++ b/src/main/java/com/dre0059/articleprocessor/controller/StatisticsController.java
@@ -74,4 +74,48 @@ public class StatisticsController {
return "statistics";
}
+
+ // sofistikovaný graf
+ @GetMapping("/statistics/citation-timeline")
+ public String citationTimeline(@RequestParam("documentId") Long documentId, Model model) {
+ Optional<Dokument> mainDocOpt = documentRepository.findById(documentId);
+
+ if (mainDocOpt.isEmpty()) {
+ return "redirect:/statistics";
+ }
+
+ Dokument mainDoc = mainDocOpt.get();
+
+ List<Map<String, Object>> references = mainDoc.getReferences().stream()
+ .map(ref -> {
+ Dokument cited = ref.getToDocument();
+ Map<String, Object> refMap = new HashMap<>();
+ refMap.put("title", cited.getTitle());
+ refMap.put("year", cited.getPublicationYear());
+ refMap.put("category", cited.getCategory() != null ? cited.getCategory().getName() : "Unknown");
+ return refMap;
+ })
+ .filter(refMap -> refMap.get("year") != null)
+ .collect(Collectors.toList());
+
+ // 🆕 ZÃskame vÅ¡etky existujúce kategórie pre Y-os grafu
+ List<Dokument> allDocuments = documentRepository.findAll();
+ List<String> categories = allDocuments.stream()
+ .map(Dokument::getCategory)
+ .filter(Objects::nonNull)
+ .map(c -> c.getName())
+ .distinct()
+ .sorted()
+ .collect(Collectors.toList());
+
+ model.addAttribute("mainArticleTitle", mainDoc.getTitle());
+ model.addAttribute("mainArticleYear", mainDoc.getPublicationYear());
+ model.addAttribute("mainArticleCategory", mainDoc.getCategory() != null ? mainDoc.getCategory().getName() : "Unknown");
+ model.addAttribute("references", references);
+ model.addAttribute("categories", categories); // ✅ Dôležité pre JS
+
+ return "citation-timeline";
+ }
+
+
}
diff --git a/src/main/java/com/dre0059/articleprocessor/repository/CategoryRepository.java b/src/main/java/com/dre0059/articleprocessor/repository/CategoryRepository.java
index 823a39d..23f6995 100644
--- a/src/main/java/com/dre0059/articleprocessor/repository/CategoryRepository.java
+++ b/src/main/java/com/dre0059/articleprocessor/repository/CategoryRepository.java
@@ -6,5 +6,5 @@ import org.springframework.stereotype.Repository;
@Repository
public interface CategoryRepository extends JpaRepository<Category, String> {
-
+ Category findByName(String name);
}
diff --git a/src/main/java/com/dre0059/articleprocessor/service/HeaderService.java b/src/main/java/com/dre0059/articleprocessor/service/HeaderService.java
index bcdfa43..d621352 100644
--- a/src/main/java/com/dre0059/articleprocessor/service/HeaderService.java
+++ b/src/main/java/com/dre0059/articleprocessor/service/HeaderService.java
@@ -84,16 +84,6 @@ public class HeaderService {
System.out.println("Author list before checking duplicity: " + authorList);
System.out.println("Author last names before checking duplicity: " + authorLastNames);
-
- // check duplicity of the document
- /*if(documentRepository.existsByTitleAndAuthorsIn(title, authorLastNames)){
- System.out.println("Document with this title and authors already exist");
-
- return null;
- }*/
-
- //Dokument dok = new Dokument(title, year, doi, publisher, "PDF");
-
List<Author> savedAuthors = authorRepository.saveAll(authorList);
Dokument dokument = documentRepository.findByTitleAndAuthorsIn(title, authorLastNames)
diff --git a/src/main/resources/static/assets/logo_FEI_en.png b/src/main/resources/static/assets/logo_FEI_en.png
new file mode 100644
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diff --git a/src/main/resources/templates/about-project.html b/src/main/resources/templates/about-project.html
new file mode 100644
index 0000000..db4482d
--- /dev/null
+++ b/src/main/resources/templates/about-project.html
@@ -0,0 +1,123 @@
+<!DOCTYPE html>
+<html lang="en" xmlns:th="http://www.thymeleaf.org">
+<head>
+ <meta charset="UTF-8">
+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
+ <title>About Project</title>
+
+ <link rel="icon" type="image/x-icon" href="/assets/favicon.ico" />
+ <link href="https://cdn.jsdelivr.net/npm/bootstrap-icons@1.5.0/font/bootstrap-icons.css" rel="stylesheet" />
+ <link href="https://fonts.googleapis.com/css?family=Lato:300,400,700,300italic,400italic,700italic" rel="stylesheet" />
+ <link rel="stylesheet" th:href="@{/styles.css}" />
+
+ <script src="https://code.jquery.com/jquery-3.6.0.min.js"></script>
+
+ <style>
+ .navbar-nav .nav-link {
+ font-size: 1.2rem;
+ margin-right: 20px;
+ color: rgb(51, 102, 255);
+ }
+
+ .navbar-nav .nav-link:hover {
+ color: #00134d;
+ }
+
+ .navbar-nav .nav-link.active {
+ color: rgb(51, 102, 255) !important;
+ }
+
+ .navbar-nav .nav-link.active:hover {
+ color: #00134d !important;
+ }
+
+ .about-container {
+ max-width: 800px;
+ margin: 60px auto;
+ padding: 20px;
+ font-size: 1.2rem;
+ line-height: 1.8;
+ color: #333;
+ }
+
+ h2.about-heading {
+ text-align: center;
+ margin-bottom: 30px;
+ font-size: 2rem;
+ font-weight: bold;
+ }
+ </style>
+</head>
+
+<body>
+
+<!-- navbar -->
+<nav class="navbar navbar-expand-lg navbar-light bg-light static-top">
+ <div class="container">
+ <a class="navbar-brand" href="/upload">Article Processor</a>
+ <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarNav"
+ aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation">
+ <span class="navbar-toggler-icon"></span>
+ </button>
+ <div class="collapse navbar-collapse justify-content-end" id="navbarNav">
+ <ul class="navbar-nav">
+ <li class="nav-item">
+ <a class="nav-link" href="/upload">Upload</a>
+ </li>
+ <li class="nav-item">
+ <a class="nav-link" href="/view">View all</a>
+ </li>
+ <li class="nav-item">
+ <a class="nav-link" href="/statistics">Statistics</a>
+ </li>
+ <li class="nav-item">
+ <a class="nav-link active" href="/about">About project</a>
+ </li>
+ </ul>
+ </div>
+ </div>
+</nav>
+
+<header class="masthead">
+ <div class="container position-relative">
+ <div class="row justify-content-center">
+ <div class="col-xl-8">
+ <div class="text-center text-white">
+ <h1 class="mb-4">About the project</h1>
+ </div>
+ </div>
+ </div>
+ </div>
+</header>
+
+<!-- About Project Content -->
+<div class="about-container">
+
+ <p>
+ <h2 class="about-heading">About the Project</h2>
+ This web application was developed as part of a bachelor's thesis with the goal of creating a simple and interactive
+ tool for processing scientific PDF documents.
+ </p>
+ <p>
+ The whole project was created at <strong>VÅ B Technical University of Ostrava</strong>.
+ </p>
+ <p>
+ It utilizes the open-source GROBID system to extract metadata such as
+ authors, titles, abstracts, and references. Users can upload PDF files, and the application automatically analyzes them
+ and stores the structured results in a database.
+ </p>
+ <p>
+ The application follows a clean three-layer architecture (MVC) and is built using Spring Boot and Java. Extracted data
+ is processed and displayed in a clear format, providing users with a user-friendly way to manage and browse academic content.
+ </p>
+ <img src="/assets/logo_FEI_en.png" alt="fei" style="max-width: 100%; margin-bottom: 20px;" />
+</div>
+
+<!-- Footer -->
+<footer class="footer bg-light mt-5">
+ <div class="container text-center">
+ <p class="text-muted small">© EliÅ¡ka KozáÄiková 2025. All Rights Reserved.</p>
+ </div>
+</footer>
+</body>
+</html>
diff --git a/src/main/resources/templates/citation-timeline.html b/src/main/resources/templates/citation-timeline.html
new file mode 100644
index 0000000..4baff6b
--- /dev/null
+++ b/src/main/resources/templates/citation-timeline.html
@@ -0,0 +1,238 @@
+ <!DOCTYPE html>
+ <html xmlns:th="http://www.thymeleaf.org">
+ <head>
+ <meta charset="UTF-8">
+ <title>Document Statistics</title>
+ <script src="https://cdn.plot.ly/plotly-1.58.5.min.js"></script>
+
+ <link rel="icon" type="image/x-icon" href="/assets/favicon.ico" />
+ <link href="https://cdn.jsdelivr.net/npm/bootstrap-icons@1.5.0/font/bootstrap-icons.css" rel="stylesheet" />
+ <link href="https://fonts.googleapis.com/css?family=Lato:300,400,700,300italic,400italic,700italic" rel="stylesheet" />
+
+ <link rel="stylesheet" th:href="@{/styles.css}" />
+
+ <style>
+ .navbar-nav .nav-link {
+ font-size: 1.2rem;
+ margin-right: 20px;
+ color: rgb(51, 102, 255);
+ }
+
+ .navbar-nav .nav-link:hover {
+ color: #00134d;
+ }
+
+ .navbar-nav .nav-link.active {
+ color: rgb(51, 102, 255) !important;
+ }
+
+ .navbar-nav .nav-link.active:hover {
+ color: #00134d !important;
+ }
+
+ h2 {
+ color: #ffffff;
+ text-align: center;
+ margin-top: 30px;
+ }
+
+ .chart-container {
+ display: flex;
+ justify-content: space-between;
+ flex-wrap: wrap;
+ gap: 20px;
+ margin-top: 30px;
+ }
+
+ .chart-box {
+ flex: 1;
+ min-width: 400px;
+ height: 500px;
+ background-color: #6780a3;
+ border-radius: 12px;
+ padding: 15px;
+ overflow: hidden;
+ }
+
+ .chart-box:hover {
+ transform: scale(1.01);
+ transition: transform 0.2s ease-in-out;
+ }
+
+ .chart-box .js-plotly-plot {
+ position: absolute;
+ top: 0;
+ left: 0;
+ width: 100% !important; /* natiahne graf presne na Å¡Ãrku boxu */
+ height: 100% !important; /* natiahne graf presne na výšku boxu */
+ }
+ </style>
+ </head>
+
+ <body>
+ <!-- Navbar -->
+ <nav class="navbar navbar-expand-lg navbar-light bg-light static-top">
+ <div class="container">
+ <a class="navbar-brand" href="/upload">Article Processor</a>
+ <button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarNav"
+ aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation">
+ <span class="navbar-toggler-icon"></span>
+ </button>
+ <div class="collapse navbar-collapse justify-content-end" id="navbarNav">
+ <ul class="navbar-nav">
+ <li class="nav-item">
+ <a class="nav-link" href="/upload">Upload</a>
+ </li>
+ <li class="nav-item">
+ <a class="nav-link" href="/view">View all</a>
+ </li>
+ <li class="nav-item">
+ <a class="nav-link" href="/statistics">Statistics</a>
+ </li>
+ <li class="nav-item">
+ <a class="nav-link" href="/upload">About project</a>
+ </li>
+ </ul>
+ </div>
+ </div>
+ </nav>
+
+ <!-- Page Content -->
+ <header class="masthead">
+ <div class="container position-relative">
+ <div class="row justify-content-center">
+ <div class="col-xl-8">
+ <div class="text-center text-white">
+ <h1 class="mb-4">📊 Graph of references</h1>
+ </div>
+ </div>
+ </div>
+ </div>
+ </header>
+
+ <!-- sofistikovaný graf -->
+ <div class="container mt-5">
+ <div class="chart-container">
+ <div id="referenceTimelineChart" class="chart-box"></div>
+ </div>
+ </div>
+
+
+ <script th:inline="javascript">
+ // Predpokladám, že tieto údaje sú dostupné z backendu cez Thymeleaf.
+ const mainArticle = {
+ title: [[${mainArticleTitle}]],
+ year: [[${mainArticleYear}]],
+ category: [[${mainArticleCategory}]]
+ };
+
+ const references = [[${references}]];
+ const categories = [[${categories}]]; // Kategórie, ktoré dostaneme z databázy
+ console.log("Categories received:", categories);
+
+ // Predstavujeme kategórie ako mapu (indexovanie podľa názvu kategórie)
+ const categoryIndex = categories.reduce((acc, category, index) => {
+ acc[category] = index + 1; // ZaÄneme od 1, aby sme vyhli hodnotám 0
+ return acc;
+ }, {});
+
+ // Funkcia pre zÃskanie Y-ovej hodnoty podľa kategórie
+ function getCategoryY(categoryName) {
+ return categoryIndex[categoryName] || 0; // Ak kategória nie je v zozname, použijeme hodnotu 0
+ }
+
+ // PripravÃme hlavný dokument
+ const mainTrace = {
+ x: [mainArticle.year],
+ y: [getCategoryY(mainArticle.category)],
+ mode: 'markers',
+ type: 'scatter',
+ name: mainArticle.title,
+ hoverinfo: 'text',
+ marker: {
+ size: 14,
+ color: 'gold'
+ },
+ // Po kliknutà na marker sa zobrazà informácia
+ customdata: [{ title: mainArticle.title, year: mainArticle.year, category: mainArticle.category }]
+ };
+
+ // PripravÃme referencie
+ const referenceTrace = {
+ x: references.map(r => r.year),
+ y: references.map(r => getCategoryY(r.category)),
+ mode: 'markers',
+ type: 'scatter',
+ name: 'References',
+ text: references.map(r => r.title),
+ hoverinfo: 'text',
+ marker: {
+ size: 10,
+ color: '#66ccff'
+ },
+ customdata: references.map(r => ({ title: r.title, year: r.year, category: r.category }))
+ };
+
+ // Spojovacie Äiary medzi referenciami a hlavným dokumentom
+ const connectionLines = references.map(ref => ({
+ type: 'line',
+ x0: ref.year,
+ y0: getCategoryY(ref.category),
+ x1: mainArticle.year,
+ y1: getCategoryY(mainArticle.category),
+ line: {
+ color: '#ffffff',
+ width: 1.5,
+ dash: 'dot'
+ }
+ }));
+
+ // Konfigurácia grafu
+ const layout = {
+ title: 'Chronological graph of categories & references',
+ paper_bgcolor: '#6780a3',
+ plot_bgcolor: '#6780a3',
+ font: { color: '#ffffff' },
+ margin: {
+ l: 180, // zväÄšà ľavý okraj pre ÄitateľnosÅ¥ názvov kategóriÃ
+ t: 150 // zväÄÅ¡Ã horný okraj pre pridanie odsadenia pod nadpis
+ },
+ xaxis: {
+ title: 'Publication Year',
+ showgrid: true,
+ zeroline: false,
+ range: [1950, 2030]
+ },
+ yaxis: {
+ title: 'Category',
+ tickmode: 'array',
+ tickvals: categories.map((_, index) => index + 1),
+ ticktext: categories,
+ showgrid: true,
+ automargin: true,
+ tickfont: {
+ size: 14
+ }
+ },
+ shapes: connectionLines,
+ legend: {
+ orientation: 'h', // horizontálne usporiadanie legendy
+ yanchor: 'bottom', // pozÃcia legendy
+ y: 1.1, // trošku nad grafom
+ xanchor: 'center',
+ x: 0.5
+ }
+ };
+
+ // Vytvorenie grafu bez pridania event listenera na kliknutie
+ Plotly.newPlot('referenceTimelineChart', [mainTrace, referenceTrace], layout, { responsive: true });
+ </script>
+
+
+ <footer class="footer bg-light mt-5">
+ <div class="container text-center">
+ <p class="text-muted small">© EliÅ¡ka KozáÄiková 2025. All Rights Reserved.</p>
+ </div>
+ </footer>
+ </body>
+ </html>
diff --git a/src/main/resources/templates/view-all.html b/src/main/resources/templates/view-all.html
index cc516be..5150e3b 100644
--- a/src/main/resources/templates/view-all.html
+++ b/src/main/resources/templates/view-all.html
@@ -56,7 +56,7 @@
<a class="nav-link" href="/statistics">Statistics</a>
</li>
<li class="nav-item">
- <a class="nav-link" href="/upload">About project</a>
+ <a class="nav-link" href="/about">About project</a>
</li>
</ul>
</div>
diff --git a/src/main/resources/templates/view-pdf.html b/src/main/resources/templates/view-pdf.html
index 6779709..a4a7f7e 100644
--- a/src/main/resources/templates/view-pdf.html
+++ b/src/main/resources/templates/view-pdf.html
@@ -12,7 +12,7 @@
<style>
.navbar {
- background-color : #dfe2ec !important;
+ background-color: #dfe2ec !important;
}
.navbar-nav .nav-link {
font-size: 1.2rem;
@@ -29,8 +29,15 @@
color: #00134d !important;
}
- .italic{
- font-style:italic;
+ .italic {
+ font-style: italic;
+ }
+
+ /* Center the graph */
+ #graphContainer {
+ display: flex;
+ justify-content: center;
+ margin-top: 20px;
}
</style>
@@ -68,6 +75,11 @@
<div class="container mt-4">
<h2><span class="italic" th:text="${docTitle}"></span></h2>
+ <!-- Button to show graph of references -->
+ <div class="mt-4" id="graphContainer" style="display: none;">
+ <button id="showGraphButton" class="btn btn-secondary">SHOW GRAPH OF REFERENCES</button>
+ </div>
+
<div class="row mt-4">
<div class="col-md-6">
<h3>Information about Document</h3>
@@ -80,7 +92,6 @@
<p><strong>Tags:</strong> <span class="italic" th:text="${tags}"></span></p>
<p><strong>Notes:</strong> <span class="italic" th:text="${notes}"></span></p>
-
<!-- Form for adding notes and delete document buttons -->
<div class="d-flex justify-content-between mt-4">
<!-- Add Notes Button -->
@@ -102,6 +113,16 @@
</div>
</div>
+ <!-- choose Category -->
+ <form id="categoryForm" class="mt-3">
+ <label for="categorySelect" class="form-label"><strong>Category:</strong></label>
+ <select id="categorySelect" class="form-select" name="category">
+ <option th:each="category : ${categories}" th:value="${category.name}" th:text="${category.name}"
+ th:selected="${category.name == category}"></option>
+ </select>
+ <button type="button" class="btn btn-primary mt-2" id="saveCategoryButton">Save Category</button>
+ </form>
+
<h3 class="mt-4">References:</h3>
<div class="table-responsive">
<table class="table table-bordered table-striped">
@@ -140,14 +161,48 @@
<script src="https://cdn.jsdelivr.net/npm/bootstrap@5.3.3/dist/js/bootstrap.bundle.min.js"></script>
-<script>
+<script th:inline="javascript">
+ // Check if the status is "PDF" and show the button
+ const status = [[${status}]]; // Get the status from the backend
+
+ if (status === "PDF") {
+ document.getElementById("graphContainer").style.display = "block";
+ }
+
+ // Save the category to the document
+ document.getElementById("saveCategoryButton").addEventListener("click", function () {
+ const selectedCategoryName = document.getElementById("categorySelect").value;
+ let documentId = [[${documentId}]];
+
+ // Send the selected category to the backend to update the document
+ fetch(`/api/documents/${documentId}/setCategory`, {
+ method: 'POST',
+ headers: {
+ 'Content-Type': 'application/json'
+ },
+ body: JSON.stringify({ categoryName: selectedCategoryName }) // Send the selected category ID
+ })
+ .then(response => {
+ if (response.ok) {
+ alert("Category updated successfully!");
+ } else {
+ alert("Error updating category.");
+ }
+ })
+ .catch(error => {
+ console.error("Error:", error);
+ alert("An error occurred.");
+ });
+ });
+
+ // Handle notes addition
document.getElementById("addNotesButton").addEventListener("click", function() {
document.getElementById("notesForm").style.display = "block";
});
document.getElementById("saveNotesButton").addEventListener("click", function() {
const notes = document.getElementById("notesTextarea").value;
- const documentId = [[${documentId}]];
+ const documentId = [[${documentId}]]; // Insert the documentId here (e.g., from Thymeleaf)
fetch(`/api/documents/${documentId}/setNotes`, {
method: 'POST',
@@ -169,6 +224,16 @@
alert("Error saving notes!");
});
});
+
+ // "SHOW GRAPH OF REFERENCES" button
+ document.getElementById("showGraphButton").addEventListener("click", function() {
+ // Get the document ID from Thymeleaf model
+ const documentId = [[${documentId}]];
+
+ // Redirect to the citation timeline page
+ window.location.href = `/statistics/citation-timeline?documentId=${documentId}`;
+ });
</script>
+
</body>
</html>
--
GitLab